Before downstream analysis, select mitochondrial and ribosomal genes (genes beginning with MTAT, MT-, MTCO, MTCY, MTERF, MTND, MTRF, MTRN, MRPL, MRPS, RPL, or RPS), or very lowly expressed genes (expressed in 25% of mapped reads being mitochondrial, and 384 cells with UMI counts outside the 3rd and 97th percentiles
This is particularly beneficial for individuals with chronic inflammatory conditions, such as arthritis
Clin Transplant 1999
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